Table 1

Number of HapMap Phase II SNPs covered ≥ 5 by distance to targeted base

Distance to

Number of SNPs (%)

HapMap

targeted base

M-3

M-4

A-7

T-1

Phase II (N)

0 bp

56,648 (91.9)

56,835 (92.2)

57,027 (92.5)

58,142 (94.3)

61,647

1 to 200 bp

50,077 (56.7)

50,805 (57.5)

46,144 (52.2)

57,923 (65.6)

88,349

> 200 bp

13,683 (0.4)

13,565 (0.4)

13,987 (0.4)

17,007 (0.5)

3,119,167

Total

120,408 (3.7)

121,205 (3.7)

117,158 (3.6)

133,072 (4.1)

3,269,163

The denominator for percentages is the total number of HapMap Phase II SNPs in that distance category.

Smith et al. Genome Biology 2011 12:R85   doi:10.1186/gb-2011-12-9-r85