Table 5 |
|||||||||
|
Genotype correlations with the genome-wide SNP genotyping chip for lower sequencing coverages |
|||||||||
|
Sequencing depth 1× to 5× |
Sequencing depth 6× to 10× |
Sequencing depth 11× to 15× |
|||||||
|
|
|
|
|||||||
|
Exome capture method |
Number of concordant SNPs |
Number of discordant SNPs |
Genotype correlation |
Number of concordant SNPs |
Number of discordant SNPs |
Genotype correlation |
Number of concordant SNPs |
Number of discordant SNPs |
Genotype correlation |
|
|
|||||||||
|
Agilent SureSelect |
779 |
258 |
75.12% |
802 |
46 |
94.58% |
647 |
17 |
97.44% |
|
Agilent SureSelect 50 Mb |
846 |
243 |
77.69% |
1,127 |
37 |
96.82% |
1,109 |
14 |
98.75% |
|
NimbleGen SeqCap |
206 |
60 |
77.44% |
361 |
19 |
95.00% |
459 |
13 |
97.25% |
|
NimbleGen SeqCap v2.0 |
110 |
39 |
73.83% |
338 |
9 |
97.41% |
486 |
3 |
99.39% |
|
|
|||||||||
|
Sulonen et al. Genome Biology 2011 12:R94 doi:10.1186/gb-2011-12-9-r94 |
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