Table 1

Summary of overall WDPMP exome sequencing

Sample ID

Tumor

Cell line

Normal


Raw reads

187,023,594

119,030,552

190,772,020

Unalignable reads

14,717,058

3,778,934

14,190,612

Aligned reads

172,306,536

115,251,618

176,581,408

Percentage alignable

92.13%

96.83%

92.56%

Reads passing filter

129,919,859

92,512,679

137,134,828

Percentage remaining after filter

69.47%

77.72%

71.88%

Number of PCR duplicates

8,498,978

15,903,654

6,070,718

Percentage PCR duplicates

6.54%

17.19%

4.43%

Reads within exome

80,042,870

49,312,008

80,869,734

Percentage reads overall in exome

61.61%

53.30%

58.97%

Percentage exome covered at 1×

97.10%

96.80%

97.00%

Percentage exome covered at 20×

86.80%

82.40%

86.30%


Yu et al. Genome Biology 2011 12:R96   doi:10.1186/gb-2011-12-9-r96

Open Data