Table 2

Gene Ontology categories significantly over-represented (P < 0.001) in ALIGATOR analysis

GO category

GO type

Genes in category

Genes on list

Expected on list

P-value

Expected hits per study

Function


GO: 0031667

Process

89

22

9.69

0

0.06

Response to nutrient levels

GO: 0007584

Process

55

18

6.04

0

0.06

Response to nutrient

GO: 0005829

Cellular

856

135

98.43

0.00002

0.1

Cytosol

GO: 0051059

Function

22

10

2.37

0.00004

0.15

NF-kappaB binding

GO: 0009991

Process

100

23

10.42

0.00006

0.19

Response to extracellular stimulus

GO: 0030321

Process

6

5

0.94

0.00028

0.7

Transepithelial chloride transport

GO: 0006414

Process

83

10

2.91

0.00036

0.88

Translational elongation

GO: 0050957

Process

8

6

2.71

0.0007

1.69

Equilibrioception

GO: 0030127

Cellular

7

4

0.55

0.00086

2.07

COPII vesicle coat

GO: 0012507

Cellular

7

4

0.55

0.00086

2.07

ER to Golgi vesicle membrane


Guha et al. Genome Biology 2012 13:R2   doi:10.1186/gb-2012-13-1-r2

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