Table 2 |
|||||||
|
Gene Ontology categories significantly over-represented (P < 0.001) in ALIGATOR analysis |
|||||||
|
GO category |
GO type |
Genes in category |
Genes on list |
Expected on list |
P-value |
Expected hits per study |
Function |
|
|
|||||||
|
GO: 0031667 |
Process |
89 |
22 |
9.69 |
0 |
0.06 |
Response to nutrient levels |
|
GO: 0007584 |
Process |
55 |
18 |
6.04 |
0 |
0.06 |
Response to nutrient |
|
GO: 0005829 |
Cellular |
856 |
135 |
98.43 |
0.00002 |
0.1 |
Cytosol |
|
GO: 0051059 |
Function |
22 |
10 |
2.37 |
0.00004 |
0.15 |
NF-kappaB binding |
|
GO: 0009991 |
Process |
100 |
23 |
10.42 |
0.00006 |
0.19 |
Response to extracellular stimulus |
|
GO: 0030321 |
Process |
6 |
5 |
0.94 |
0.00028 |
0.7 |
Transepithelial chloride transport |
|
GO: 0006414 |
Process |
83 |
10 |
2.91 |
0.00036 |
0.88 |
Translational elongation |
|
GO: 0050957 |
Process |
8 |
6 |
2.71 |
0.0007 |
1.69 |
Equilibrioception |
|
GO: 0030127 |
Cellular |
7 |
4 |
0.55 |
0.00086 |
2.07 |
COPII vesicle coat |
|
GO: 0012507 |
Cellular |
7 |
4 |
0.55 |
0.00086 |
2.07 |
ER to Golgi vesicle membrane |
|
|
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|
Guha et al. Genome Biology 2012 13:R2 doi:10.1186/gb-2012-13-1-r2 |
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