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SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data

Mark F Rogers1, Julie Thomas2, Anireddy SN Reddy2 and Asa Ben-Hur13*

Author Affiliations

1 Department of Computer Science, 1873 Campus Delivery, Colorado State University, Fort Collins, CO 80523-1873, USA

2 Department of Biology and Program in Molecular Plant Biology, 1878 Campus Delivery, Colorado State University, Fort Collins, CO 80523-1878, USA

3 Department of Statistics, 1877 Campus Delivery, Colorado State University, Fort Collins, CO 80523-1877, USA

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Genome Biology 2012, 13:R4  doi:10.1186/gb-2012-13-1-r4

Published: 31 January 2012

Additional files

Additional file 1:

Supplementary information. Includes a section on validating SpliceGrapher predictions with evidence from other experiments, plus supplementary tables and figures.

Format: PDF Size: 2.3MB Download file

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