Example of a Cufflinks prediction. We provide the predictions made by Cufflinks for the same gene whose SpliceGrapher predictions are shown in Figure 1. Some of the splice junctions used by Cufflinks are predicted to be false positives by SpliceGrapher's accurate splice junction classifiers (red edges in the plot). These lead to detection of questionable AS events.
Rogers et al. Genome Biology 2012 13:R4 doi:10.1186/gb-2012-13-1-r4