This article is part of a special issue on epigenomics.

Open Access Method

BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation

Jing-Quan Lim1, Chandana Tennakoon12, Guoliang Li3, Eleanor Wong34, Yijun Ruan3, Chia-Lin Wei45 and Wing-Kin Sung13*

Author Affiliations

1 Department of Computer Science, National University of Singapore, Singapore 117417

2 NUS Graduate School for Integrative Sciences and Engineering, (CeLS), #05-01, 28 Medical Drive, Singapore 117456

3 Genome Institute of Singapore, 60 Biopolis Street, #02-01 Genome, Singapore 138672

4 Department of Biological Sciences, National University of Singapore, Singapore 117543

5 Joint Genome Institute, Walnut Creek, CA 94598, USA

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Genome Biology 2012, 13:R82  doi:10.1186/gb-2012-13-10-r82

Published: 3 October 2012

Additional files

Additional file 1:

Chosen parameters. This file details the parameters used by the various programs in the Results section.

Format: DOCX Size: 16KB Download file

Open Data