Table 2 |
|||||
|
Comparison of speed and unique mapping rates on three lanes of human bisulfite data |
|||||
|
Number of reads |
Unique mapping (%) a |
Running time (minutes) a |
|||
|
|
|
||||
|
Read file |
BatMeth |
BS-Seeker |
BatMeth |
BS-Seeker |
|
|
|
|||||
|
SRR019048 |
15,331,851 |
37.4 |
37.2 |
30 |
87 |
|
SRR019501 |
7,217,883 |
44.7 |
44.5 |
16 |
41 |
|
SRR019597 |
5,943,586 |
58.2 |
58.1 |
13 |
37 |
|
|
|||||
|
aThreshold of two mismatches used. |
|||||
|
Lim et al. Genome Biology 2012 13:R82 doi:10.1186/gb-2012-13-10-r82 |
|||||
