Table 2

Comparison of speed and unique mapping rates on three lanes of human bisulfite data

Number of reads

Unique mapping (%) a

Running time (minutes) a



Read file

BatMeth

BS-Seeker

BatMeth

BS-Seeker


SRR019048

15,331,851

37.4

37.2

30

87

SRR019501

7,217,883

44.7

44.5

16

41

SRR019597

5,943,586

58.2

58.1

13

37


aThreshold of two mismatches used.

Lim et al. Genome Biology 2012 13:R82   doi:10.1186/gb-2012-13-10-r82

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