Table 3 |
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|
Unique mapping rates and speed on 100,000 real color reads |
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|
SRR204026 |
Unique mapping (%)a |
Estimated noise (%)b |
Timing |
|
|
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|
BatMeth (fast) |
39.6 |
0.47 |
77 s |
|
BatMeth (default) |
45.8 |
0.94 |
247 s |
|
BatMeth (sensitive) |
52.1 |
1.75 |
521 s |
|
B-SOLANAc |
37.4 |
2.06 |
130 s |
|
SOCS-Bd |
28.3 |
4.55 |
~71 h |
|
|
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aWe tabulated the unique mapping rates of the 100,000 reads. bThe error rates are estimated from the number of reverse-strand mappings as stated by Equation 2 in Materials and methods. cNote that 3.26% of B-SOLANA's resultant reads are double-counted as B-SOLANA reported two hits for them. One of the two hits is assumed to be correct for the estimation of the noise rate of B-SOLANA. dReverse-strand mapping is allowed by enabling G-A transitions in SOCS-B. BatMeth fast, default, and sensitive modes were run with -n0-N3, -n0-N4, -n0-N5 as parameters, respectively. |
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|
Lim et al. Genome Biology 2012 13:R82 doi:10.1186/gb-2012-13-10-r82 |
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