BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

Kasper D Hansen¹^†, Benjamin Langmead¹²^† and Rafael A Irizarry¹²

Corresponding authors: Kasper D Hansen khansen@jhsph.edu - Benjamin Langmead blangmea@jhsph.edu - Rafael A Irizarry rafa@jhu.edu
† Equal contributors

¹ Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA

² Center for Epigenetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA

Genome Biology 2012, 13:R83 doi:10.1186/gb-2012-13-10-r83

Published: 3 October 2012

Additional file 1:

Additional figures. A PDF file containing Figures S1 to S5.

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Additional file 2:

Alignment code.

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Additional file 3:

Data analysis code.

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