Table 1 |
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|
Sample text file that can be read by methylKit. |
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|
chrBase |
chr |
base |
strand |
coverage |
freqC |
freqT |
|
|
||||||
|
chr21.9764539 |
chr21 |
9764539 |
R |
12 |
25 |
75 |
|
chr21.9764513 |
chr21 |
9764513 |
R |
12 |
0 |
100 |
|
chr21.9820622 |
chr21 |
9820622 |
F |
13 |
0 |
100 |
|
chr21.9837545 |
chr21 |
9837545 |
F |
11 |
0 |
100 |
|
chr21.9849022 |
chr21 |
9849022 |
F |
124 |
72.58 |
27.42 |
|
chr21.9853326 |
chr21 |
9853326 |
F |
17 |
70.59 |
29.41 |
|
|
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|
methylKit can read tab-delimited text files with the following format: the text file should include a unique.id, chromosome name, base position, strand, read coverage, % of C bases and % of T bases on that location. |
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|
Akalin et al. Genome Biology 2012 13:R87 doi:10.1186/gb-2012-13-10-r87 |
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