Table 1

Sample text file that can be read by methylKit.

chrBase

chr

base

strand

coverage

freqC

freqT


chr21.9764539

chr21

9764539

R

12

25

75

chr21.9764513

chr21

9764513

R

12

0

100

chr21.9820622

chr21

9820622

F

13

0

100

chr21.9837545

chr21

9837545

F

11

0

100

chr21.9849022

chr21

9849022

F

124

72.58

27.42

chr21.9853326

chr21

9853326

F

17

70.59

29.41


methylKit can read tab-delimited text files with the following format: the text file should include a unique.id, chromosome name, base position, strand, read coverage, % of C bases and % of T bases on that location.

Akalin et al. Genome Biology 2012 13:R87   doi:10.1186/gb-2012-13-10-r87

Open Data