Additional file 5.

Figure S3. (a) All EsCM LV samples (EsCM 1 to 4) were compared against each of the CTRL samples (CTRL 1 to 4) using Fisher's exact test (P < 0.05 in at least 14 comparisons). Green color indicates hypomethylation in EsCM compared to the corresponding CTRL and red color indicates the converse, hypermethylation in EsCM. The color bar on the vertical axis represents families of repeat elements. A consistent pattern of hypomethylation was found only in satellite (SAT) family repeats in EsCM (arrow labels). (b) A bar chart representing the number of repeat sequences per family, following the elimination of repeats that were not differentially methylated between the two groups of samples.

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Haider et al. Genome Biology 2012 13:R90   doi:10.1186/gb-2012-13-10-r90