Table 3 |
||||||||
|
Gene clusters and epigenetic control regions |
||||||||
|
P-value range |
||||||||
|
|
||||||||
|
Cluster name |
Chr. |
Size (Mbp) |
Start |
Stop |
Minimum |
Maximum |
Number of genes regulated |
Overlap opposite sex cluster |
|
|
||||||||
|
Female |
||||||||
|
Chr1-109.35 |
1 |
4 |
109350000 |
113350000 |
1.1E-30 |
8.2E-03 |
6 |
No |
|
Chr1-159.65 |
1 |
3.9 |
159650000 |
163550000 |
2.1E-05 |
5.6E-04 |
4 |
No |
|
Chr1-185.85 |
1 |
2.15 |
185850000 |
1.88E+08 |
8.2E-03 |
8.2E-03 |
5 |
Yes |
|
Chr1-206.4 |
1 |
3.95 |
206400000 |
210350000 |
4.4E-09 |
8.2E-03 |
10 |
Yes |
|
Chr1-81.05 |
1 |
3.05 |
81050000 |
84100000 |
8.2E-03 |
8.2E-03 |
5 |
Yes |
|
Chr1-93.9 |
1 |
2.8 |
93900000 |
96700000 |
5.6E-04 |
8.2E-03 |
6 |
Yes |
|
Chr2-188.8 |
2 |
4.1 |
188800000 |
192900000 |
2.1E-05 |
8.2E-03 |
10 |
Yes |
|
Chr3-107.4 |
3 |
3.8 |
107400000 |
111200000 |
2.1E-05 |
8.2E-03 |
5 |
No |
|
Chr3-112.8 |
3 |
3.7 |
112800000 |
116500000 |
5.6E-04 |
8.2E-03 |
6 |
No |
|
Chr3-7.2 |
3 |
2.6 |
7200000 |
9800000 |
8.2E-03 |
8.2E-03 |
5 |
No |
|
Chr4-165.3 |
4 |
2 |
165300000 |
167300000 |
8.2E-03 |
8.2E-03 |
5 |
No |
|
Chr4-26.2 |
4 |
3.8 |
26200000 |
3.00E+07 |
8.2E-03 |
8.2E-03 |
4 |
No |
|
Chr5-142.1 |
5 |
2.6 |
142100000 |
144700000 |
5.6E-04 |
8.2E-03 |
6 |
No |
|
Chr5-151.75 |
5 |
3.75 |
151750000 |
155500000 |
2.1E-05 |
8.2E-03 |
8 |
No |
|
Chr5-59.9 |
5 |
3.25 |
59900000 |
63150000 |
8.2E-03 |
8.2E-03 |
6 |
No |
|
Chr6-125.35 |
6 |
2.7 |
125350000 |
128050000 |
5.6E-04 |
8.2E-03 |
6 |
No |
|
Chr7-118.8 |
7 |
3.85 |
118800000 |
122650000 |
8.2E-03 |
8.2E-03 |
7 |
No |
|
Chr7-48.35 |
7 |
3.55 |
48350000 |
51900000 |
2.1E-05 |
8.2E-03 |
6 |
Yes |
|
Chr7-8.5 |
7 |
3.9 |
8500000 |
12400000 |
2.1E-05 |
8.2E-03 |
8 |
No |
|
Chr10-55.7 |
10 |
2.8 |
55700000 |
58500000 |
8.2E-03 |
8.2E-03 |
5 |
Yes |
|
Chr12-19.65 |
12 |
2 |
19650000 |
21650000 |
8.2E-03 |
8.2E-03 |
5 |
No |
|
Chr13-85.75 |
13 |
3.85 |
85750000 |
89600000 |
2.1E-05 |
8.2E-03 |
9 |
Yes |
|
Chr15-3.45 |
15 |
3.85 |
3450000 |
7300000 |
4.2E-07 |
8.2E-03 |
6 |
Yes |
|
Chr16-17.3 |
16 |
3 |
17300000 |
20300000 |
5.6E-04 |
8.2E-03 |
6 |
No |
|
Chr19-24.55 |
19 |
2.4 |
24550000 |
26950000 |
8.2E-03 |
8.2E-03 |
5 |
Yes |
|
Chr20-2.75 |
20 |
3.1 |
2750000 |
5850000 |
5.6E-04 |
8.2E-03 |
7 |
Yes |
|
Chrx-39 |
X |
3.25 |
3.90E+07 |
42250000 |
2.1E-05 |
8.2E-03 |
7 |
No |
|
Male |
||||||||
|
Chr1-78.4 |
1 |
2.6 |
78400000 |
8.10E+07 |
4.9E-02 |
1.1E-02 |
17 |
Yes |
|
Chr1-81.6 |
1 |
4.9 |
81600000 |
86500000 |
4.9E-02 |
7.1E-04 |
21 |
Yes |
|
Chr1-93.35 |
1 |
4.1 |
93350000 |
97450000 |
4.9E-02 |
2.2E-05 |
22 |
Yes |
|
Chr1-109.4 |
1 |
3.95 |
109400000 |
113350000 |
7.4E-11 |
1.2E-19 |
16 |
No |
|
Chr1-184.85 |
1 |
2.8 |
184850000 |
187650000 |
4.9E-02 |
1.1E-02 |
12 |
Yes |
|
Chr1-200.8 |
1 |
2.65 |
200800000 |
203450000 |
4.9E-02 |
2.4E-02 |
11 |
No |
|
Chr1-204.75 |
1 |
10.4 |
204750000 |
215150000 |
4.9E-02 |
7.6E-08 |
70 |
Yes |
|
Chr2-180.15 |
2 |
3.45 |
180150000 |
183600000 |
4.9E-02 |
1.9E-03 |
18 |
No |
|
Chr2-188.65 |
2 |
3.9 |
188650000 |
192550000 |
4.9E-02 |
2.2E-05 |
18 |
Yes |
|
Chr3-144.75 |
3 |
3 |
144750000 |
147750000 |
4.9E-02 |
4.9E-02 |
11 |
No |
|
Chr4-75.4 |
4 |
2.45 |
75400000 |
77850000 |
2.4E-02 |
1.1E-02 |
12 |
No |
|
Chr5-136.75 |
5 |
2.2 |
136750000 |
138950000 |
4.9E-02 |
4.9E-02 |
11 |
No |
|
Chr5-163.75 |
5 |
3.7 |
163750000 |
167450000 |
4.9E-02 |
4.8E-03 |
18 |
No |
|
Chr6-132.3 |
6 |
4 |
132300000 |
136300000 |
7.4E-11 |
5.4E-65 |
19 |
No |
|
Chr6-137.4 |
6 |
2.45 |
137400000 |
139850000 |
4.9E-02 |
1.1E-02 |
13 |
No |
|
Chr7-8.5 |
7 |
4.4 |
8500000 |
12900000 |
2.1E-05 |
8.2E-03 |
25 |
Yes |
|
Chr7-112.3 |
7 |
4.1 |
112300000 |
116400000 |
4.9E-02 |
7.7E-05 |
22 |
No |
|
Chr8-45.4 |
8 |
3.9 |
45400000 |
49300000 |
4.9E-02 |
7.1E-04 |
15 |
No |
|
Chr8-112.8 |
8 |
3.05 |
112800000 |
115850000 |
4.9E-02 |
4.8E-03 |
14 |
No |
|
Chr9-72.25 |
9 |
3.3 |
72250000 |
75550000 |
4.9E-02 |
1.1E-02 |
12 |
No |
|
Chr9-8.35 |
9 |
2.15 |
8350000 |
10500000 |
4.9E-02 |
4.9E-02 |
10 |
No |
|
Chr10-9.85 |
10 |
2.5 |
9850000 |
12350000 |
4.9E-02 |
4.9E-02 |
10 |
Yes |
|
Chr10-12.15 |
10 |
3.5 |
12150000 |
15650000 |
2.4E-02 |
1.1E-02 |
16 |
Yes |
|
Chr10-38.9 |
10 |
2.3 |
38900000 |
41200000 |
4.9E-02 |
4.9E-02 |
10 |
No |
|
Chr10-54.75 |
10 |
3.4 |
54750000 |
58150000 |
4.9E-02 |
4.8E-03 |
14 |
Yes |
|
Chr10-62.45 |
10 |
2.35 |
62450000 |
64800000 |
4.9E-02 |
4.9E-02 |
12 |
No |
|
Chr10-86.55 |
10 |
5.05 |
86550000 |
91600000 |
4.9E-02 |
7.7E-05 |
28 |
No |
|
Chr10-104.15 |
10 |
3.85 |
104150000 |
1.08E+08 |
4.9E-02 |
7.1E-04 |
18 |
No |
|
Chr12-15.65 |
12 |
2.1 |
15650000 |
17750000 |
4.9E-02 |
4.9E-02 |
10 |
No |
|
Chr12-21.3 |
12 |
2.75 |
21300000 |
24050000 |
4.9E-02 |
4.9E-02 |
11 |
Yes |
|
Chr12-31.75 |
12 |
2.55 |
31750000 |
34300000 |
4.9E-02 |
2.4E-02 |
11 |
No |
|
Chr12-41 |
12 |
3.7 |
4.10E+07 |
44700000 |
4.9E-02 |
7.7E-05 |
10 |
No |
|
Chr13-85.65 |
13 |
3.4 |
85650000 |
89050000 |
4.9E-02 |
4.8E-03 |
14 |
Yes |
|
Chr14-36.1 |
14 |
3.95 |
36100000 |
40050000 |
1.9E-03 |
6.1E-06 |
15 |
No |
|
Chr14-82.2 |
14 |
3.2 |
82200000 |
85400000 |
4.9E-02 |
2.4E-02 |
13 |
No |
|
Chr15-31.9 |
15 |
2.95 |
31900000 |
34850000 |
2.4E-02 |
4.8E-03 |
15 |
Yes |
|
Chr16-17.45 |
16 |
4.05 |
17450000 |
21500000 |
4.9E-02 |
6.1E-06 |
20 |
Yes |
|
Chr19-23.6 |
19 |
3.2 |
23600000 |
26800000 |
4.9E-02 |
4.8E-03 |
14 |
Yes |
|
Chr19-34.95 |
19 |
2.7 |
34950000 |
37650000 |
4.9E-02 |
4.9E-02 |
11 |
No |
|
Chr20-2 |
20 |
6.05 |
2.00E+06 |
8050000 |
4.9E-02 |
2.4E-04 |
34 |
Yes |
|
Chr20-9.25 |
20 |
3.9 |
9250000 |
13150000 |
2.4E-02 |
4.8E-03 |
16 |
Yes |
|
|
||||||||
|
Skinner et al. Genome Biology 2012 13:R91 doi:10.1186/gb-2012-13-10-r91 |
||||||||
