Table 1 |
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|
EpiExplorer's response time and memory footprint across thousands of actual user analyses |
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|
Putative enhancers |
CpG islands (specific) |
Transcription start sites |
Gene promoters (-5kb to 1kb) |
5hmC hotspots (Szulwach [35]) |
Genome-wide tiling regions (5kb) |
|
|
|
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|
Number of genomic regions |
1,762 |
27,638 |
36,655 |
36,655 |
82,221 |
616,093 |
|
Preprocessing time (h) |
0.2 |
0.8 |
0.9 |
0.9 |
1.5 |
17 |
|
Search index size (MB) |
11 |
145 |
122 |
127 |
240 |
962 |
|
Mean query time (s) |
0.02 |
0.06 |
0.12 |
0.13 |
0.2 |
0.8 |
|
95th percentile query time (s) |
0.07 |
0.34 |
0.5 |
0.57 |
0.64 |
3.2 |
|
Percent queries completed in ≤2 s |
100% |
99.9% |
99.7% |
99.1% |
99.1% |
88% |
|
|
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|
Halachev et al. Genome Biology 2012 13:R96 doi:10.1186/gb-2012-13-10-r96 |
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