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InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor

Alain Coletta1*†, Colin Molter1†, Robin Duqué1, David Steenhoff3, Jonatan Taminau3, Virginie de Schaetzen3, Stijn Meganck3, Cosmin Lazar3, David Venet1, Vincent Detours2, Ann Nowé3, Hugues Bersini1 and David Y Weiss Solís1*

1 Institut de Recherches Interdisciplinaires et de Developpements en Intelligence Artificielle, the Computer and Decision Engineering Department, Universite Libre de Bruxelles, 87 av. Adolphe Buyl, 1050 Bruxelles, Belgium

2 IRIBHM, School of Medicine, Campus Hospitalo-Facultaire Erasme, Universite Libre de Bruxelles, 808 route de Lennik, B1070 Bruxelles, Belgium

3 The Computational Modeling Lab (CoMo) Department of Computer Science Faculty of Sciences (WE) Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium

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Genome Biology 2012, 13:R104 doi:10.1186/gb-2012-13-11-r104

Published: 18 November 2012

Additional files

Additional file 3:

Intersections of differentially expressed genes in three breast cancer studies.

Format: TXT Size: 1KB Download file

Open Data

Additional file 1:

InSilico DB architecture overview.

Format: PDF Size: 96KB Download file

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Open Data

Additional file 2:

InSilico DB database schema.

Format: PDF Size: 368KB Download file

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Open Data