Research
Transposable elements reveal a stem cell-specific class of long noncoding RNAs
1 Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138, USA
2 Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142, USA
3 Department of Pathology, Beth Israel Deaconess Medical Center, Boston, MA 02215, USA
Genome Biology 2012, 13:R107 doi:10.1186/gb-2012-13-11-r107
Published: 26 November 2012Additional files
Additional file 2:
TE content of lincRNAs. Excel table describing TE content of lincRNAs and statistical analysis.
Format: XLSX Size: 128KB Download file
Additional file 3:
TE content of protein coding genes. Excel table describing the TE content of protein coding genes and statistical analysis.
Format: XLSX Size: 127KB Download file
Additional file 4:
RNA-Seq data. Excel table describing RNA-Seq datasets used to build lincRNAs and estimate abundances.
Format: XLSX Size: 48KB Download file
Additional file 5:
TEs in lincRNAs orientation statistics. Excel table describing orientation statistics of TEs in lincRNAs.
Format: XLSX Size: 106KB Download file
Additional file 6:
ChIP-Seq data. Excel table describing ChIP-Seq datasets used to study HERHV-lincRNAs.
Format: XLSX Size: 49KB Download file
Additional file 7:
GTF file describing our full lincRNA catalog.
Format: GTF Size: 7.1MB Download file
Additional file 8:
GTF file describing only the most expressed isoforms of our lincRNA catalog.
Format: GTF Size: 2.5MB Download file
Additional file 9:
Cufflinks output file describing abundance estimates for our full lincRNA catalog.
Format: GZ Size: 8.4MB Download file
