Table 1 |
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Distribution of peptides derived from a representative selection of known nuclear proteins across the three IDC stages. |
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|
Protein ID |
Product description |
Fraction 1 |
Fraction 2 |
Fraction 3 |
Fraction 4 |
Fraction 5 |
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|
|
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|
R |
T |
S |
R |
T |
S |
R |
T |
S |
R |
T |
S |
R |
T |
S |
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|
|
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|
Histones |
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|
PFF0860c |
histone H2A |
1 |
1 |
1 |
7 |
1 |
3 |
12 |
3 |
5 |
7 |
4 |
8 |
1 |
1 |
3 |
|
PFC0920w |
histone H2A.Z |
2 |
2 |
9 |
4 |
6 |
8 |
3 |
5 |
4 |
3 |
4 |
||||
|
PF11_0062 |
histone H2B |
2 |
1 |
7 |
2 |
9 |
36 |
7 |
10 |
12 |
14 |
22 |
9 |
7 |
12 |
|
|
PF07_0054 |
histone H2B variant |
2 |
1 |
1 |
3 |
17 |
9 |
4 |
12 |
7 |
15 |
8 |
5 |
7 |
||
|
PFF0510w |
histone H3 |
1 |
4 |
8 |
4 |
7 |
2 |
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|
PFF0865w |
histone H3 variant |
1 |
3 |
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|
PF13_0185 |
histone H3, CENP-A variant |
3 |
2 |
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|
PF11_0061 |
histone H4 |
1 |
3 |
2 |
3 |
1 |
7 |
10 |
3 |
4 |
15 |
13 |
22 |
8 |
6 |
13 |
|
DNA-directed RNA polymerase II complex |
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|
PFC0805w |
DNA-directed RNA pol II, putative |
4 |
8 |
31 |
5 |
4 |
4 |
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|
PFI1130c |
DNA-directed RNA pol II, putative |
1 |
6 |
2 |
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|
PF10_0269 |
DNA-directed RNA pol II, putative |
1 |
2 |
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|
PFB0715w |
DNA-directed RNA pol II 2nd largest subunit, putative |
1 |
18 |
4 |
2 |
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|
PFL0665c |
RNA polymerase subunit 8c, putative |
1 |
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|
PFB0245c |
DNA-directed RNA pol II 16 kDa subunit, putative |
2 |
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|
PF13_0341 |
DNA-directed RNA pol II, putative |
3 |
1 |
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|
PFA0505c |
DNA-directed RNA pol II, putative |
1 |
1 |
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|
PF13_0023 |
DNA-directed RNA pol II, putative |
3 |
2 |
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|
PF07_0027 |
DNA-directed RNA pol II 8.2 kDa polypeptide, putative |
1 |
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|
ApiAP2 transcription factors |
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|
PFF0200c |
PfSIP2 |
1 |
7 |
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|
PFE0840c |
transcription factor with AP2 domain(s), putative |
3 |
1 |
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|
PFD0985w |
transcription factor with AP2 domain(s), putative |
1 |
1 |
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|
PF11_0404 |
transcription factor with AP2 domain(s), putative |
1 |
6 |
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|
PF10_0075 |
transcription factor with AP2 domain(s), putative |
3 |
9 |
4 |
3 |
2 |
8 |
10 |
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|
PF14_0471 |
transcription factor with AP2 domain(s), putative |
4 |
1 |
4 |
5 |
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|
PF14_0633 |
transcription factor with AP2 domain(s), putative |
1 |
2 |
2 |
2 |
6 |
6 |
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|
PF14_0533 |
transcription factor with AP2 domain(s), putative |
1 |
3 |
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|
PF11_0091 |
transcription factor with AP2 domain(s), putative |
2 |
9 |
1 |
2 |
1 |
5 |
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|
PFL1900w |
transcription factor with AP2 domain(s), putative |
29 |
2 |
14 |
21 |
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|
PFF0670w |
transcription factor with AP2 domain(s), putative |
4 |
2 |
3 |
35 |
|||||||||||
|
PF14_0079 |
transcription factor with AP2 domain(s), putative |
1 |
||||||||||||||
|
MAL8P1.153 |
transcription factor with AP2 domain(s), putative |
4 |
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|
|
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|
Indicated are the numbers of unique tryptic peptides measured for each protein in each fraction and IDC stage, derived from either replicate A or B, whichever displayed the higher number of unique peptides. R, ring stages; S, schizonts; T, trophozoites;. |
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|
Oehring et al. Genome Biology 2012 13:R108 doi:10.1186/gb-2012-13-11-r108 |
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