Additional file 2.

Results of RED2 with mutual information criterion on the S. cerevisiae upstream regions with the Gasch et al. stress compendium. The set of motifs inferred by RED2 on the Gasch et al. complete compendium. Provided for each motif are the logo of the motif, the number of genes that have the motif in their promoter region, the expression profiles (heatmap) associated with the motif, a histogram of the motif occurrence positions, the existence/absence of any strand bias, and the name of the ScerTF motif that best matches the inferred motif (if any at 15% FDR).

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Lajoie et al. Genome Biology 2012 13:R109   doi:10.1186/gb-2012-13-11-r109