Table 1

Ler-specific H3K27me3 targets adjacent to TEs polymorphic between Col and Ler

Left_TE

Ler-specifc H3K27me3

Group

Right_TE

TE family

PCR size in Col

PCR size in Ler

Confirmed target site duplication


AT2G16820

AT2G16830

Rep_Col

AT2G16832

Mutator-like

NA

NA

NA

AT2TE65230

AT2G34840

Exp_Col

NO

DNA/MuDr

2.8 kb

1.8 kb

ATTTG

NO

AT4G09143

Rep_Col

AT4G09146

LTR/Copia

NA

NA

NA

Node

AT5G35810

Rep_Col

AT5G35820

LTR/Copia

6.6 kb

1.0 kb

ATACCT

NO

AT5G42640

Rep_Col

AT5G42645

LTR/Copia

7.9 kb

3.0 kb

CCGCA

NO

AT4G20480

Exp_Col

AT4G20490

LTR/GYPSY

NA

NA

NA

AT4G10865

AT4G10870

Rep_Col

NO

AT4G10880 is not a TE

NA

NA

NA

AT2G01550

AT2G01560

Rep_Col

NO

Non-LTR retrotransposon (LINE)

NA

NA

NA

NO

AT3G60560

Rep_Col

AT3G60565

LTR/Copia

NA

NA

NA

AT5TE82820

AT5G56920

Rep_Col

AT5TE82825

left:DNA/AtREP10D; right:RC/Helitron

3.3 kb

2.0 kb

ATTAAGTAA

NO

AT5G56910

Exp_Col

AT5TE82820

DNA/RP1-AT

2.1 kb

1.8 kb

no

AT2TE37940

AT2G20910

Rep_Col

NO

DNA/MuDR

NA

NA

NA

NO

AT1G66300

Rep_Col

AT1TE81190

RC/Helitron

NA

NA

NA


NA, not available.

Dong et al. Genome Biology 2012 13:R117   doi:10.1186/gb-2012-13-12-r117

Open Data