Table 1 |
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|
Ler-specific H3K27me3 targets adjacent to TEs polymorphic between Col and Ler |
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|
Left_TE |
Ler-specifc H3K27me3 |
Group |
Right_TE |
TE family |
PCR size in Col |
PCR size in Ler |
Confirmed target site duplication |
|
|
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|
AT2G16820 |
AT2G16830 |
Rep_Col |
AT2G16832 |
Mutator-like |
NA |
NA |
NA |
|
AT2TE65230 |
AT2G34840 |
Exp_Col |
NO |
DNA/MuDr |
2.8 kb |
1.8 kb |
ATTTG |
|
NO |
AT4G09143 |
Rep_Col |
AT4G09146 |
LTR/Copia |
NA |
NA |
NA |
|
Node |
AT5G35810 |
Rep_Col |
AT5G35820 |
LTR/Copia |
6.6 kb |
1.0 kb |
ATACCT |
|
NO |
AT5G42640 |
Rep_Col |
AT5G42645 |
LTR/Copia |
7.9 kb |
3.0 kb |
CCGCA |
|
NO |
AT4G20480 |
Exp_Col |
AT4G20490 |
LTR/GYPSY |
NA |
NA |
NA |
|
AT4G10865 |
AT4G10870 |
Rep_Col |
NO |
AT4G10880 is not a TE |
NA |
NA |
NA |
|
AT2G01550 |
AT2G01560 |
Rep_Col |
NO |
Non-LTR retrotransposon (LINE) |
NA |
NA |
NA |
|
NO |
AT3G60560 |
Rep_Col |
AT3G60565 |
LTR/Copia |
NA |
NA |
NA |
|
AT5TE82820 |
AT5G56920 |
Rep_Col |
AT5TE82825 |
left:DNA/AtREP10D; right:RC/Helitron |
3.3 kb |
2.0 kb |
ATTAAGTAA |
|
NO |
AT5G56910 |
Exp_Col |
AT5TE82820 |
DNA/RP1-AT |
2.1 kb |
1.8 kb |
no |
|
AT2TE37940 |
AT2G20910 |
Rep_Col |
NO |
DNA/MuDR |
NA |
NA |
NA |
|
NO |
AT1G66300 |
Rep_Col |
AT1TE81190 |
RC/Helitron |
NA |
NA |
NA |
|
|
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|
NA, not available. |
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|
Dong et al. Genome Biology 2012 13:R117 doi:10.1186/gb-2012-13-12-r117 |
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