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Ray Meta: scalable de novo metagenome assembly and profiling

Sébastien Boisvert12*, Frédéric Raymond12, Élénie Godzaridis2, François Laviolette3 and Jacques Corbeil14

Author Affiliations

1 Infectious Diseases Research Center, CHUQ Research Center, 2705, boul. Laurier, Québec (Québec), G1V 4G2, Canada

2 Faculty of Medicine, Laval University, 1050, av. de la Médecine, Québec (Québec), G1V 0A6, Canada

3 Department of Computer Science and Software Engineering, Faculty of Science and Engineering, Laval University, 1065, av. de la Médecine, Québec (Québec), G1V 0A6, Canada

4 Department of Molecular Medicine, Faculty of Medicine, Laval University, 1050, av. de la Médecine, Québec (Québec), G1V 0A6, Canada

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Genome Biology 2012, 13:R122  doi:10.1186/gb-2012-13-12-r122

Published: 22 December 2012

Additional files

Additional file 1:

Tables S1, S2, S3 & S4. Table S1: Composition of the simulated 100-genome metagenome. Table S2: Composition of the simulated 1,000-genome metagenome. Table S3: Overlay data on metagenome assembly of 124 gut microbiome samples. Table S4: List of genomes used for coloring de Bruijn graphs.

Format: PDF Size: 452KB Download file

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Open Data

Additional file 2:

List of 313 samples from the Human Microbiome Project.

Format: TXT Size: 7KB Download file

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Additional file 3:

Documentation and scripts to reproduce all experiments.

Format: BZ2 Size: 1.7MB Download file

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Additional file 4:

Software source code for Ray Meta and Ray Communities.

Format: BZ2 Size: 315KB Download file

Open Data