Table 1

Comparison of assemblies produced by MetaVelvet and Ray Meta

MetaVelvet

Ray Meta

Shared


ERS006494

Reads

372,147,956

Scaffoldsa

50,136

56,363

Total length (nt)

150,904,880

156,075,852

130,979,321

Average length (nt)

3,009

2,769

N50 length (nt)

6,141

12,117

Longest length (nt)

146,549

570,359

ERS006497

Reads

322,444,920

Scaffoldsa

61,093

52,194

Total length (nt)

113,403,805

111,187,163

94,649,612

Average length (nt)

1,856

2,130

N50 length (nt)

2,778

5,430

Longest length (nt)

115,684

430,963

Running time (h:min)

4:34

10:06

ERS006592

Reads

53,869,960

Scaffoldsa

4,358

9,387

Total length (nt)

19,501,348

24,687,275

18,061,386

Average length (nt)

4,474

2,629

N50 length (nt)

8,819

10,277

Longest length (nt)

87,983

137,473

Running time (h:min)

0:41

4:28

SRS011098

Reads

202,487,723

Scaffoldsa

30,458

36,130

Total length (nt)

60,574,679

83,736,387

51,938,031

Average length (nt)

1,988

2,317

N50 length (nt)

3,117

4,961

Longest length (nt)

192,898

222,213

Running time (h:min)

8:34

6:38

SRS017227

Reads

139,002,751

Scaffoldsa

106,957

89,953

Total length (nt)

171,200,737

186,958,660

126,068,148

Average length (nt)

1,600

2,078

N50 length (nt)

2,168

3,771

Longest length (nt)

102,749

224,709

Running time (h:min)

9:00

7:10

SRS018661

Reads

288,475,194

Scaffoldsa

30,709

18,541

Total length (nt)

35,281,226

36,891,130

21,659,465

Average length (nt)

1,148

1,989

N50 length (nt)

1,223

3,794

Longest length (nt)

111,404

377,149

Running time (h:min)

1:24

4:42


aOnly scaffolds with a length higher or equal to 500 were considered. nt, nucleotide.

Boisvert et al. Genome Biology 2012 13:R122   doi:10.1186/gb-2012-13-12-r122

Open Data