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Open Access Method

Differential analysis of high-throughput quantitative genetic interaction data

Gordon J Bean1 and Trey Ideker1234*

Author Affiliations

1 Bioinformatics and Systems Biology Program, University of California, San Diego, 9500 Gilman Drive, Dept. 0419, La Jolla, CA 92093-0419, USA

2 Department of Bioengineering, University of California, San Diego, 9500 Gilman Drive MC 0412, La Jolla, CA 92093-0412, USA

3 Institute for Genomic Medicine, University of California, San Diego, 9500 Gilman Drive, 0642, La Jolla, CA 92093, USA

4 Department of Medicine, University of California, San Diego, 9500 Gilman Drive, # 0671, La Jolla, CA 92093-0671, USA

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Genome Biology 2012, 13:R123  doi:10.1186/gb-2012-13-12-r123

Published: 26 December 2012

Additional files

Additional file 1:

MATLAB implementation of our method.

Format: M Size: 6KB Download file

Open Data

Additional file 2:

A table of the dS, S, and profile similarity scores for the data from Bandyopadhyay et al. [6].

Format: TXT Size: 7.1MB Download file

Open Data

Additional file 3:

a PDF containing our additional notes and figures.

Format: PDF Size: 2.5MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

a table indicating the gene pairs used as the DNA damage response bronze standard in our study.

Format: TXT Size: 32KB Download file

Open Data