Additional file 4.

List of the genes affected by recombination based only on BRATNexGen results. Genes were considered recombinant if more than 100 bp of their sequence have undergone recombination based on the BRATNexGen output. The gene identifier is with respect to the reference genome TW20. The total number of genes affected by recombination according to this criterion was 441.

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Castillo-Ramírez et al. Genome Biology 2012 13:R126   doi:10.1186/gb-2012-13-12-r126