Table 1 |
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|
Comparison of performance of methods with respect to identifying the four inversions on Venter chromosome 17 |
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|
Method |
Minimum number to detect 3 |
Minimum number to detect 4 |
|
|
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|
High quality alignments |
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|
Breakdancer |
3 |
NA |
|
GASV |
3 |
NA |
|
GASVPro-HQ |
3 |
NA |
|
Hydra-HQ |
4 |
NA |
|
All alignments |
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|
GASVPro |
3 |
4 |
|
Hydra |
5 |
10 |
|
|
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|
GASVPro is the only method with perfect specificity and sensitivity, detecting all four inversions with no false positive predictions. NA, not applicable. |
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|
Sindi et al. Genome Biology 2012 13:R22 doi:10.1186/gb-2012-13-3-r22 |
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