Table 1

Comparison of performance of methods with respect to identifying the four inversions on Venter chromosome 17

Method

Minimum number to detect 3

Minimum number to detect 4


High quality alignments

Breakdancer

3

NA

GASV

3

NA

GASVPro-HQ

3

NA

Hydra-HQ

4

NA

All alignments

GASVPro

3

4

Hydra

5

10


GASVPro is the only method with perfect specificity and sensitivity, detecting all four inversions with no false positive predictions. NA, not applicable.

Sindi et al. Genome Biology 2012 13:R22   doi:10.1186/gb-2012-13-3-r22

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