Table 4 |
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|
Perl and PHP modules used in TFe |
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|
Language |
Module |
Purpose |
|
|
||
|
Perl |
CGI |
Web browser interface |
|
Perl |
CGI::Session |
User login |
|
Perl |
Crypt::Blowfish |
Data encryption and random string generation |
|
Perl |
DBI |
MySQL database interface |
|
Perl |
GD::Image |
Creation of TF binding site diagrams |
|
Perl |
HTML::Detoxifier |
User input filtering |
|
Perl |
Image::Resize |
Image resizing and formatting |
|
Perl |
LWP::Simple |
Interface between TFe and web-based APIs |
|
Perl |
pazar |
Data retrieval from PAZAR |
|
Perl |
pazar::gene |
Data retrieval from PAZAR |
|
Perl |
pazar::reg_seq |
Data retrieval from PAZAR |
|
Perl |
TFBS::PatternGen::MEME |
Creation of TF position weight matrices |
|
PHP |
dompdf 0.5.1 |
PDF generation |
|
|
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|
Listed on this table are the second and third party modules incorporated into TFe, with their respective programming languages, usage in TFe, and current web addresses at the time of publication. |
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|
Yusuf et al. Genome Biology 2012 13:R24 doi:10.1186/gb-2012-13-3-r24 |
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