Table 1

Numbers of mRNAs regulated after stress exposure

Translation up

Translation down

mRNA up

mRNA down


H2O2, 15 min

26 (33)

75 (123)

171

38

H2O2, 60 min

191 (275)

566 (575)

455

374

39°C, 15 min

245 (280)

119 (140)

370

129

39°C, 60 min

99 (126)

146 (202)

291

334

MMS, 15 min

3 (19)

5 (27)

27

0

MMS, 60 min

27 (48)

60 (151)

147

15


Numbers of mRNAs among the 4,976 nuclear-encoded protein-coding genes that are regulated during the different stress conditions indicated at left. Translation up/down indicate the numbers of mRNAs that are up- or down-regulated, respectively, at the level of translation according to the criteria used (Figure 1c; Materials and methods), with numbers before filtering by visual inspection indicated in parentheses. mRNA up/down indicate numbers of mRNAs whose expression is up- or down-regulated, respectively, with respect to transcript abundance, based on a two-fold cutoff from mean expression ratio. Annotated lists of the translationally regulated genes are given in Additional file 2.

Lackner et al. Genome Biology 2012 13:R25   doi:10.1186/gb-2012-13-4-r25

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