Table 1 |
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|
Numbers of mRNAs regulated after stress exposure |
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|
Translation up |
Translation down |
mRNA up |
mRNA down |
|
|
|
||||
|
H2O2, 15 min |
26 (33) |
75 (123) |
171 |
38 |
|
H2O2, 60 min |
191 (275) |
566 (575) |
455 |
374 |
|
39°C, 15 min |
245 (280) |
119 (140) |
370 |
129 |
|
39°C, 60 min |
99 (126) |
146 (202) |
291 |
334 |
|
MMS, 15 min |
3 (19) |
5 (27) |
27 |
0 |
|
MMS, 60 min |
27 (48) |
60 (151) |
147 |
15 |
|
|
||||
|
Numbers of mRNAs among the 4,976 nuclear-encoded protein-coding genes that are regulated during the different stress conditions indicated at left. Translation up/down indicate the numbers of mRNAs that are up- or down-regulated, respectively, at the level of translation according to the criteria used (Figure 1c; Materials and methods), with numbers before filtering by visual inspection indicated in parentheses. mRNA up/down indicate numbers of mRNAs whose expression is up- or down-regulated, respectively, with respect to transcript abundance, based on a two-fold cutoff from mean expression ratio. Annotated lists of the translationally regulated genes are given in Additional file 2. |
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|
Lackner et al. Genome Biology 2012 13:R25 doi:10.1186/gb-2012-13-4-r25 |
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