Table 1

DNA-Seq measurements for aneuploid segments

Deficiency

First missing base

Last missing base

Measured in

RPM in Df region

RPM in WT

Fold difference


Df(2L)ED2809/+

67365

72671

Female

29.5

54.3

1.84

Df(2L)ED2809/+

67365

72671

Male

27.9

60.3

2.16

Df(2L)ED62/+

480873

826788

Female

1,371.5

2,912.8

2.12

Df(2L)ED62/+

480873

826788

Male

1,366.1

3,313.8

2.43

Df(2L)ED80/+

568095

850645

Female

1,168.28

2,373.4

2.03

Df(2L)ED80/+

568095

850645

Male

1,253.1

2,691.5

2.14

Df(2L)ED87/+

568095

852827

Female

1,103.5

2,390.5

2.17

Df(2L)ED87/+

568095

852827

Male

1,177.3

2,711.5

2.30

Df(2L)EDHsp60c/+

5564618

5809650

Female

1,060.5

2,151.0

2.03

Df(2L)EDHsp60c/+

5564618

5809650

Male

1,170.1

2,362.2

2.02

Df(2L)ED280/+

5801930

5907456

Female

447.8

922.5

2.06

Df(2L)ED280/+

5801930

5907456

Male

509.2

970.4

1.92

Df(2L)ED292/+

5801930

5981009

Female

744.8

1,510.1

2.03

Df(2L)ED292/+

5801930

5981009

Male

804.1

1,648.5

2.05

Df(2L)ED385/+

5980272

6465772

Female

1,801.7

3,841.6

2.13

Df(2L)ED385/+

5980272

6465772

Male

2,130.8

4,350.7

2.04

Df(2L)ED7007/+

6709099

6963808

Female

1,989.6

2,107.4

1.06

Df(2L)ED7007/+

6709099

6963808

Male

1,401.4

2,308.7

1.65

Df(2L)ED489/+

7204186

7576637

Female

1,692.6

3,338.0

1.97

Df(2L)ED489/+

7204186

7576637

Male

1,803.2

3,485.6

1.93

Df(2L)ED499/+

7423765

7800182

Female

1,727.3

3,337.2

1.93

Df(2L)ED499/+

7423765

7800182

Male

1,844.5

3,514.0

1.91

Df(2L)ED475/+

7423915

7576637

Female

700.2

1,428.4

2.04

Df(2L)ED475/+

7423915

7576637

Male

786.9

1,474.1

1.87

Df(2L)ED478/+

7437442

7576637

Female

581.2

1,309.2

2.26

Df(2L)ED478/+

7437442

7576637

Male

628.7

1,348.3

2.14

Df(2L)ED623/+

8403564

8700124

Female

1,335.1

2,531.3

1.90

Df(2L)ED623/+

8403564

8700124

Male

1,504.1

2,718.2

1.81

Df(2L)ED695/+

9699225

9918192

Female

929.1

1,858.3

2.00

Df(2L)ED695/+

9699225

9918192

Male

1,009.2

2,041.9

2.02

Df(2L)ED775/+

12010010

12975028

Female

4,424.3

7,821.9

1.77

Df(2L)ED775/+

12010010

12975028

Male

4,758.8

8,352.9

1.76

Df(2L)ED776/+

12434538

12975028

Female

2,086.6

4,337.0

2.08

Df(2L)ED776/+

12434538

12975028

Male

2,347.3

4,638.7

1.98

Df(2L)ED777/+

12484452

12975028

Female

1,997.0

3,910.5

1.96

Df(2L)ED777/+

12484452

12975028

Male

2,387.6

4,182.3

1.75

Df(2L)ED793/+

13934848

14689337

Female

3,324.0

6,563.4

1.97

Df(2L)ED793/+

13934848

14689337

Male

3,619.5

7,125.3

1.97

Df(2L)ED800/+

14490575

15332688

Female

3,750.7

6,968.0

1.86

Df(2L)ED800/+

14490575

15332688

Male

4,032.9

7,456.4

1.85

Df(2L)ED1231/+

19158440

19464056

Female

1,266.4

2,533.5

2.00

Df(2L)ED1231/+

19158440

19464056

Male

1,362.8

2,789.8

2.05

Df(2L)ED1305/+

20085397

20382385

Female

932.4

1,831.8

1.96

Df(2L)ED1305/+

20085397

20382385

Male

1,003.9

2,005.4

2.00

Mean

1.97

Standard deviation

0.21


WT, wild type.

Malone et al. Genome Biology 2012 13:R28   doi:10.1186/gb-2012-13-4-r28

Open Data