Table 3 |
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Factors found to be correlated with mRNA half-lives in B. cereus ATCC 10987 |
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|
Variablea |
P-value |
N |
Pearson correlation |
|
|
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|
Expression (RPKM) |
10-15 |
2,586 |
0.33 |
|
COG class |
10-08 |
2,586 |
NA |
|
KEGG pathway |
0.001 |
2,586 |
NA |
|
G+C% coding region |
10-12 |
2,586 |
0.27 |
|
Number of genes in operonb |
10-5/0.04/10-3 |
2,586/2421/1847 |
0.25/0.12/0.10 |
|
Second base of RBS |
0.02 |
2,586 |
NA |
|
Last base of RBS |
0.008 |
2,586 |
NA |
|
Repeat element part of transcript |
10-18 |
2,586 |
NA |
|
|
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|
aA description of all the different variables is given in Supplementary Table S4 in Additional file 1. bThe three numbers represent the data for cases when i) all operons are used, ii) operons composed of more than 20 ORFs are removed, and iii) operons containing more than 5 ORFs are removed. NA, not available. |
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Kristoffersen et al. Genome Biology 2012 13:R30 doi:10.1186/gb-2012-13-4-r30 |
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