Additional file 2.

Table S1. Information regarding the positive probesets identified by the FIRMA analysis, compiled using the exonmap and xmapcore bioconductor packages [1-3]. probeset refers to the exon-probeset of interest. Fields: sotaCluster refers to the self-organizing tree algorithm (sota) cluster the probeset is part of (Figure 1b); adj.P.Val.Limma refers to the multiple-testing corrected P-value associated with the one-way ANOVA for an effect of time executed in limma [68,81] (see Materials and methods); ensExonID refers to the Ensembl [82] identifier for the exon within which the probeset is located; probeLoc refers to the mm9 genomic co-ordinates for the probeset of interest; exonSequence refers to the sequence of the exon identified by ensExonID; divisableBy3 indicates whether the exon's length is a multiple of three or not; ensGeneID refers to the Ensembl [82] identifier for the gene within which the exon identified by ensExonID is located; geneLoc refers to the mm9 genomic co-ordinates for the gene of interest; validation refers to validation status of the exon of interest (nd, not determined); description refers to official long name of the gene of interest.

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McGlincy et al. Genome Biology 2012 13:R54   doi:10.1186/gb-2012-13-6-r54