Table 3 |
|||
|
Functional properties of gap closed regions |
|||
|
Annotation type |
Total size in NC_000014 (bp) |
Nucleotides closed with GapFiller (bp) |
Portion of total nucleotides closed (%) |
|
|
|||
|
Gene |
38,883,890 |
33,969 |
38.67% |
|
mRNA |
34,180,962 |
26,818 |
30.53% |
|
CDS |
29,380,348 |
23,617 |
26.89% |
|
Other RNA |
3,245,865 |
2,755 |
3.14% |
|
V-segment |
78,961 |
655 |
0.75% |
|
C-region |
36,984 |
23 |
0.03% |
|
ncRNA |
11,447 |
0 |
0% |
|
Total |
105,818,457 |
87,837 |
100.00% |
|
|
|||
|
Functionalities associated with the nucleotides incorporated with GapFiller based on the annotation of human chromosome 14. Clearly the method can add valuable sequence information to a number of functionalities present in GenBank:NC_000014. Most nucleotides are incorporated in coding sequence (CDS) and mRNA regions. ncRNA, non-coding RNA. |
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|
Boetzer and Pirovano Genome Biology 2012 13:R56 doi:10.1186/gb-2012-13-6-r56 |
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