Table 3

Functional properties of gap closed regions

Annotation type

Total size in NC_000014 (bp)

Nucleotides closed with GapFiller (bp)

Portion of total nucleotides closed (%)


Gene

38,883,890

33,969

38.67%

mRNA

34,180,962

26,818

30.53%

CDS

29,380,348

23,617

26.89%

Other RNA

3,245,865

2,755

3.14%

V-segment

78,961

655

0.75%

C-region

36,984

23

0.03%

ncRNA

11,447

0

0%

Total

105,818,457

87,837

100.00%


Functionalities associated with the nucleotides incorporated with GapFiller based on the annotation of human chromosome 14. Clearly the method can add valuable sequence information to a number of functionalities present in GenBank:NC_000014. Most nucleotides are incorporated in coding sequence (CDS) and mRNA regions. ncRNA, non-coding RNA.

Boetzer and Pirovano Genome Biology 2012 13:R56   doi:10.1186/gb-2012-13-6-r56

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