Table 1

Summary of SOLiD libraries and sequence reads

Library

Read length (bp)

Insert size (bp)

Runs

Reads

Mapped reads

Analyzed reads^a

Coverage depth of analyzed reads

Fragment

50

-

8

2,648,128,521

1,976,720,560 (74.7%)

1,974,496,337 (74.6%)

33.4

Mate-pair A

25 (×2)

600-800

2

906,783,481

621,175,871 (68.5%)

355,589,008 (39.2%)^b

3.4

Mate-pair B

25 (×2)

800-1,000

2

1,335,583,547

814,866,634 (61.0%)

508,168,736 (38.0%)^b

4.8

Total

-

-

12

4,890,495,549

3,412,763,065 (69.8%)

2,838,254,081 (58.0%)

41.5

^aReads mapped on chrM and chrUr were removed. ^b'PCR or optical duplicates' (defined by Bioscope; mapped more than 100 loci) were removed, and properly paired reads were selected; each read of a pair was mapped on the same chromosome in a proper direction at a proper distance from each other.

Higashino et al. Genome Biology 2012 13:R58   doi:10.1186/gb-2012-13-7-r58