Table 1 |
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|
Most abundant protein domains in diatom genomes |
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|
COG |
To |
Tp |
Pt |
Fc |
|
|
|
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|
ATPases |
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|
COG0515 |
SPS1, serine/threonine protein kinase |
115 |
132 |
119 |
137 |
|
COG0464 |
SpoVK, ATPases of the AAA+ class |
90 |
43 |
38 |
44 |
|
COG1132 |
MdlB, ABC-type multidrug transport system, ATPase and permease components |
54 |
44 |
47 |
51 |
|
COG1222 |
RPT1, ATP-dependent 26S proteasome regulatory subunit |
50 |
41 |
37 |
42 |
|
COG0465 |
HflB, ATP-dependent Zn proteases |
49 |
37 |
35 |
39 |
|
COG1223 |
Predicted ATPase (AAA+ superfamily) |
44 |
39 |
34 |
41 |
|
COG3899 |
Predicted ATPase |
42 |
48 |
11 |
2 |
|
COG2274 |
SunT, ABC-type bacteriocin/lantibiotic exporters, contain an amino-terminal double-glycine peptidase domain |
42 |
52 |
50 |
61 |
|
COG5265 |
ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components |
40 |
33 |
30 |
33 |
|
COG4618 |
ArpD, ABC-type protease/lipase transport system, ATPase and permease components |
39 |
41 |
42 |
43 |
|
COG4987 |
CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components |
31 |
50 |
46 |
56 |
|
COG4988 |
CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
29 |
52 |
49 |
60 |
|
COG0488 |
Uup, ATPase components of ABC transporters with duplicated ATPase domains |
29 |
50 |
46 |
53 |
|
COG1131 |
CcmA, ABC-type multidrug transport system, ATPase component |
22 |
56 |
52 |
65 |
|
COG0661 |
AarF, predicted unusual protein kinase |
21 |
21 |
22 |
26 |
|
COG0474 |
MgtA, cation transport ATPase |
12 |
19 |
19 |
18 |
|
Basic cellular functions |
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|
COG0513 |
SrmB, superfamily II DNA and RNA helicases |
46 |
48 |
44 |
54 |
|
COG0553 |
HepA, superfamily II DNA/RNA helicases, SNF2 family |
35 |
27 |
24 |
36 |
|
COG5059 |
KIP1, kinesin-like protein |
24 |
25 |
15 |
14 |
|
COG1643 |
HrpA, HrpA-like helicases |
21 |
14 |
9 |
20 |
|
COG0443 |
DnaK, molecular chaperone |
18 |
14 |
9 |
10 |
|
COG5021 |
HUL4, ubiquitin-protein ligase |
15 |
7 |
8 |
8 |
|
COG5022 |
Myosin heavy chain |
14 |
11 |
9 |
9 |
|
COG1249 |
Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydro-lipoamide dehydrogenase (E3) component, and related enzymes |
12 |
14 |
13 |
20 |
|
Chitinases |
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|
COG3325 |
ChiA, chitinase |
19 |
19 |
1 |
0 |
|
|
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|
Protein domains are listed based on Clusters of Orthologous Groups COG with an E-value threshold of 1.0E-10. To, Thalassiosira oceanica; Tp, Thalassiosira pseudonana; Pt, Phaeodactylum tricornutum; Fc. Fragilariopsis cylindrus. |
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|
Lommer et al. Genome Biology 2012 13:R66 doi:10.1186/gb-2012-13-7-r66 |
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