SNPs, indels, and structural variants (SVs) in the FVB/NJ mouse, in two narrowed regions of the chromosome 10 Ath11 locus. (a) The 10a locus from 1 to 7.3 Mb. (b) The 10b locus from 20.1 to 21.9 Mb. (c) Within the 10a region is the Mthdf1l gene, with non-synonymous and synonymous SNPs shown. Shown in red are non-synonymous SNPs or SNPs that affect intronic splice sites. In green are synonymous SNPs. In blue are gene models based on Ensembl version 64. Previously known FVB/NJ SNPs from dbSNP version 128 are also shown. The 10a region displayed in (a) begins at 3 Mb since the sequence from 1 bp to 3 Mb has not been assembled in the reference genome. Shown in the 10b region are the genes described in Wolfrum et al.  (Pde7b, Ahi1, Myb, Hbs1l, Aldh8a1, Sgk1), and additional predicted genes from Ensembl (1700020N01Rik, 1700021A07Rik, Gm5420, 4930444G20Rik, E030030I06Rik).
Wong et al. Genome Biology 2012 13:R72 doi:10.1186/gb-2012-13-8-r72