Table 3

Non-synonymous single nucleotide variants unique to FVB/NJ, relative to the 17 Mouse Genomes Project strains [14], with Grantham matrix score >150

Chromosome

Position

Ref/FVB

Gene ID

Gene name

Description

GMS


9

119518884

C/A

ENSMUSG00000034533

Scn10a

Sodium channel, voltage-gated, type X, alpha

205

4

138523178

G/T

ENSMUSG00000070661

Rnf186

Ring finger protein 186

205

19

13485488

G/T

ENSMUSG00000063777

Olfr1469

Olfactory receptor 1469

205

7

19600268

T/C

ENSMUSG00000040891

Foxa3

Forkhead box A3

194

15

101542878

C/A

ENSMUSG00000061527

Krt5

Keratin 5

184

9

85738244

C/T

ENSMUSG00000035274

Tpbg

Trophoblast glycoprotein

180

7

112715121

G/A

ENSMUSG00000037032

Apbb1

Amyloid beta (A4) precursor protein-binding, family B, member 1

180

6

43230658

C/T

ENSMUSG00000033542

Arhgef5

Rho guanine nucleotide exchange factor (GEF) 5

180

2

84642975

C/T

ENSMUSG00000027078

Ube2l6

Ubiquitin-conjugating enzyme E2L 6

180

19

3356468

C/T

ENSMUSG00000024900

Cpt1a

Carnitine palmitoyltransferase 1a, liver

180

19

16100043

C/T

ENSMUSG00000049247

Rpl37-ps1

Ribosomal protein 37, pseudogene 1

180

4

118859970

C/G

ENSMUSG00000028644

Ermap

Erythroblast membrane-associated protein

177

1

152466145

C/A

ENSMUSG00000066842

Hmcn1

Hemicentin 1

160

19

13137960

G/T

ENSMUSG00000060593

Olfr1454

Olfactory receptor 1454

159

19

12566519

C/A

ENSMUSG00000039982

Dtx4

Deltex 4 homolog (Drosophila)

159

18

14002581

C/A

ENSMUSG00000024420

Zfp521

Zinc finger protein 521

159

9

38623499

C/T

ENSMUSG00000043911

Olfr922

Olfactory receptor 922

155

1

168031022

T/A

ENSMUSG00000026564

Dusp27

Dual specificity phosphatase 27 (putative)

152


The C57BL/6J reference allele and FVB/NJ allele are shown (Ref/FVB). Predicted genes with unknown function are excluded. Gene IDs, names, and descriptions are from Ensembl version 64. GMS, Grantham matrix score.

Wong et al. Genome Biology 2012 13:R72   doi:10.1186/gb-2012-13-8-r72

Open Data