Table 4

Excess of L1 repeats in CNV breakpoints

Name

Excessa

Divergenceb

Length (bp)

Number of repeats in genome

Number of repeats in breakpoints

Number of breakpoints with repeats


L1_Cf

3.92

0.035

1,192

16,127

178

137

L1_Canis

2.54

0.088

799

72,587

678

309

L1_Canid

1.87

0.144

534

42,070

254

135

L1_Carn

1.25

0.168

525

132,806

652

275

Eutheria

0.91

0.246

359

589,155

2046

590


aThe proportion of repeat coverage in breakpoints versus whole genome. bAverage divergence of the repeat from its reference in RepBase.

Berglund et al. Genome Biology 2012 13:R73   doi:10.1186/gb-2012-13-8-r73

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