Table 4 |
||||||
|
Excess of L1 repeats in CNV breakpoints |
||||||
|
Name |
Excessa |
Divergenceb |
Length (bp) |
Number of repeats in genome |
Number of repeats in breakpoints |
Number of breakpoints with repeats |
|
|
||||||
|
L1_Cf |
3.92 |
0.035 |
1,192 |
16,127 |
178 |
137 |
|
L1_Canis |
2.54 |
0.088 |
799 |
72,587 |
678 |
309 |
|
L1_Canid |
1.87 |
0.144 |
534 |
42,070 |
254 |
135 |
|
L1_Carn |
1.25 |
0.168 |
525 |
132,806 |
652 |
275 |
|
Eutheria |
0.91 |
0.246 |
359 |
589,155 |
2046 |
590 |
|
|
||||||
|
aThe proportion of repeat coverage in breakpoints versus whole genome. bAverage divergence of the repeat from its reference in RepBase. |
||||||
|
Berglund et al. Genome Biology 2012 13:R73 doi:10.1186/gb-2012-13-8-r73 |
||||||
