Table 5

CNVs identified in each breed and sample compared to the reference genome

Total CNV loci per breed

Average CNV loci per sample



Breed

Samples

Total

MB

BS

Total

MB

BS


Border Terrier (BTe)

2

156

154

2

128.5

126.5

2

Boxer (Box)

2

103

102

1

64.5

64

0.5

Cavalier King Charles Spaniel (CCS)

2

189

182

7

148.5

143.5

5

Chihuahua (Chi)

2

181

178

3

142

140.5

1.5

Dachshund (Dac)

2

180

172

8

131

127

4

English Cocker Spaniel (ECS)

2

166

165

1

129

128.5

0.5

English Springer Spaniel (ESS)

2

214

207

7

160

156

4

Finnish Spitz (FSp)

2

186

176

10

148.5

140.5

8

German Shepherd (GSh)

2

163

160

3

126

123.5

2.5

Labrador Retriever (LRe)

2

170

168

2

129

128

1

Nova Scotia Duck Tolling Retriever (NSD)

2

193

190

3

147.5

145.5

2

Poodle (Pdl)

2

182

180

2

130

129

1

Sarloos (Sar)

2

175

168

7

135

130

5

Schnauzer (Sch)

2

169

163

6

127

123.5

3.5

Swedish Elkhound (Elk)

2

159

158

1

116.5

115.5

1

Average (2-sample breeds)

2

172.4

168.2

4.2

130.9

128.1

2.8

Golden Retriever (GRe)

10

264

255

9

121.6

118.8

2.8

Irish Wolfhound (IrW)

10

229

215

14

136.2

127.7

8.5

Average (10-sample breeds)

10

246.5

235

11.5

128.9

123.3

5.7

Wolf (Wlf)

3

163

160

3

96.3

95.3

1


MB, multi-breed (CNVs found in more than one breed); BS, breed-specific (CNVs found in only one breed).

Berglund et al. Genome Biology 2012 13:R73   doi:10.1186/gb-2012-13-8-r73

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