Table 5 |
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|
CNVs identified in each breed and sample compared to the reference genome |
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|
Total CNV loci per breed |
Average CNV loci per sample |
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|
|
|
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|
Breed |
Samples |
Total |
MB |
BS |
Total |
MB |
BS |
|
|
|||||||
|
Border Terrier (BTe) |
2 |
156 |
154 |
2 |
128.5 |
126.5 |
2 |
|
Boxer (Box) |
2 |
103 |
102 |
1 |
64.5 |
64 |
0.5 |
|
Cavalier King Charles Spaniel (CCS) |
2 |
189 |
182 |
7 |
148.5 |
143.5 |
5 |
|
Chihuahua (Chi) |
2 |
181 |
178 |
3 |
142 |
140.5 |
1.5 |
|
Dachshund (Dac) |
2 |
180 |
172 |
8 |
131 |
127 |
4 |
|
English Cocker Spaniel (ECS) |
2 |
166 |
165 |
1 |
129 |
128.5 |
0.5 |
|
English Springer Spaniel (ESS) |
2 |
214 |
207 |
7 |
160 |
156 |
4 |
|
Finnish Spitz (FSp) |
2 |
186 |
176 |
10 |
148.5 |
140.5 |
8 |
|
German Shepherd (GSh) |
2 |
163 |
160 |
3 |
126 |
123.5 |
2.5 |
|
Labrador Retriever (LRe) |
2 |
170 |
168 |
2 |
129 |
128 |
1 |
|
Nova Scotia Duck Tolling Retriever (NSD) |
2 |
193 |
190 |
3 |
147.5 |
145.5 |
2 |
|
Poodle (Pdl) |
2 |
182 |
180 |
2 |
130 |
129 |
1 |
|
Sarloos (Sar) |
2 |
175 |
168 |
7 |
135 |
130 |
5 |
|
Schnauzer (Sch) |
2 |
169 |
163 |
6 |
127 |
123.5 |
3.5 |
|
Swedish Elkhound (Elk) |
2 |
159 |
158 |
1 |
116.5 |
115.5 |
1 |
|
Average (2-sample breeds) |
2 |
172.4 |
168.2 |
4.2 |
130.9 |
128.1 |
2.8 |
|
Golden Retriever (GRe) |
10 |
264 |
255 |
9 |
121.6 |
118.8 |
2.8 |
|
Irish Wolfhound (IrW) |
10 |
229 |
215 |
14 |
136.2 |
127.7 |
8.5 |
|
Average (10-sample breeds) |
10 |
246.5 |
235 |
11.5 |
128.9 |
123.3 |
5.7 |
|
Wolf (Wlf) |
3 |
163 |
160 |
3 |
96.3 |
95.3 |
1 |
|
|
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|
MB, multi-breed (CNVs found in more than one breed); BS, breed-specific (CNVs found in only one breed). |
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|
Berglund et al. Genome Biology 2012 13:R73 doi:10.1186/gb-2012-13-8-r73 |
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