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Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

Kevin Y Yip12345, Chao Cheng12, Nitin Bhardwaj12, James B Brown6, Jing Leng1, Anshul Kundaje7, Joel Rozowsky12, Ewan Birney8, Peter Bickel6, Michael Snyder9 and Mark Gerstein1102*

Author Affiliations

1 Program in Computational Biology and Bioinformatics, Yale University, 260 Whitney Avenue, New Haven, CT 06520, USA

2 Department of Molecular Biophysics and Biochemistry, Yale University, 260 Whitney Avenue, New Haven, CT 06520, USA

3 Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong

4 Hong Kong Bioinformatics Centre, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong

5 CUHK-BGI Innovation Institute of Trans-omics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong

6 Department Statistics, University of California at Berkeley, 367 Evans Hall Berkeley, CA 94720, USA

7 Department of Computer Science, Stanford University, 353 Serra Mall, Stanford, CA 94305, USA

8 European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK

9 Department of Genetics, Stanford University School of Medicine, Mail Stop-5120, Stanford, CA 94305, USA

10 Department of Computer Science, Yale University, 51 Prospect Street, New Haven, CT 06511, USA

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Genome Biology 2012, 13:R48  doi:10.1186/gb-2012-13-9-r48

Published: 5 September 2012

Additional files

Additional file 1:

Supplementary materials. This file contains supplementary tables, legends of supplementary figures, and information about a supplementary web site.

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Additional file 2:

Supplementary figures. This file contains supplementary figures.

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