Table 2

Results of the predicted enhancers for experimental validation in the first round of mouse reporter assays

Coordinates (hg19)

VISTA ID

Enhancer activity

Tissues with enhancer activity

Reproducibility


Chr2

145339602

145341530

hs1802

Positive

Midbrain (mesencephalon)

8/8

Chr7

115451531

115454796

hs1798

Positive

Eye

6/9

Forebrain

9/9

Hindbrain (rhombencephalon)

6/9

Midbrain (mesencephalon)

6/9

Neural tube

6/9

Chr7

121967528

121971078

hs1809

Positive

Forebrain

9/9

Hindbrain (rhombencephalon)

7/9

Midbrain (mesencephalon)

7/9

Neural tube

5/9

Chr8

106602865

106607408

hs1800

Positive

Cranial nerve

8/10

Dorsal root ganglion

6/10

Midbrain (mesencephalon)

9/10

Trigeminal V (ganglion, cranial)

8/10

Chr11

118308306

118311240

hs1793

Negative

Chr14

57474144

57478090

hs1791

Positive

Midbrain (mesencephalon)

15/15


Yip et al. Genome Biology 2012 13:R48   doi:10.1186/gb-2012-13-9-r48

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