Table 3

Results of the predicted enhancers for experimental validation in the second round of mouse reporter assays

Coordinates (hg19)

VISTA ID

Corresponding ID in mouse assay

Enhancer activity

Tissues with enhancer activity

Reproducibility


Chr1

39,629,409

39,631,707

hs1999

ENH_DISCR_2

Negative

Chr2

7,025,512

7,027,025

hs2015

ENH_DISCR_18

Negative

Chr2

68,419,973

68,421,991

hs2040

Positive

Nose

3/5

Chr2

159,885,988

159,889,012

hs2027

Positive

Heart

11/11

Chr2

169,971,561

169,974,373

hs2034

ENH_DISCR_37

Negative

Chr3

65,589,981

65,591,565

hs2038

ENH_DISCR_41

Negative

Chr3

72,368,145

72,370,230

hs2006

Negative

Chr3

124,304,700

124,307,917

hs2031

ENH_DISCR_34

Negative

Chr3

141,579,463

141,580,810

hs2041

ENH_DISCR_44

Positive

Limb

3/7

Chr4

109,893,210

109,895,294

hs2021

ENH_DISCR_24

Negative

Chr5

176,076,732

176,078,530

hs2007

Positive

Heart

3/7

Chr8

59,769,794

59,772,587

hs2029

ENH_DISCR_32

Negative

Chr9

75,758,359

75,760,288

hs2000

Negative

Chr11

74,781,340

74,785,285

hs2047

Negative

Chr12

31,867,650

31,868,817

hs2043

Negative

Chr16

89,384,737

89,387,643

hs2036

Negative

Chr17

45,368,528

45,369,514

hs2033

Positive

Chr17

73,347,819

73,348,933

hs2023

ENH_DISCR_26

Negative

Chr20

48,291,612

48,294,178

hs2045

ENH_DISCR_48

Negative

Chr22

21,953,368

21,954,302

hs2026

ENH_DISCR_29

Positive

Tail

9/17


Yip et al. Genome Biology 2012 13:R48   doi:10.1186/gb-2012-13-9-r48

Open Data