Table 3 |
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|
Results of the predicted enhancers for experimental validation in the second round of mouse reporter assays |
|||||||
|
Coordinates (hg19) |
VISTA ID |
Corresponding ID in mouse assay |
Enhancer activity |
Tissues with enhancer activity |
Reproducibility |
||
|
|
|||||||
|
Chr1 |
39,629,409 |
39,631,707 |
hs1999 |
ENH_DISCR_2 |
Negative |
||
|
Chr2 |
7,025,512 |
7,027,025 |
hs2015 |
ENH_DISCR_18 |
Negative |
||
|
Chr2 |
68,419,973 |
68,421,991 |
hs2040 |
Positive |
Nose |
3/5 |
|
|
Chr2 |
159,885,988 |
159,889,012 |
hs2027 |
Positive |
Heart |
11/11 |
|
|
Chr2 |
169,971,561 |
169,974,373 |
hs2034 |
ENH_DISCR_37 |
Negative |
||
|
Chr3 |
65,589,981 |
65,591,565 |
hs2038 |
ENH_DISCR_41 |
Negative |
||
|
Chr3 |
72,368,145 |
72,370,230 |
hs2006 |
Negative |
|||
|
Chr3 |
124,304,700 |
124,307,917 |
hs2031 |
ENH_DISCR_34 |
Negative |
||
|
Chr3 |
141,579,463 |
141,580,810 |
hs2041 |
ENH_DISCR_44 |
Positive |
Limb |
3/7 |
|
Chr4 |
109,893,210 |
109,895,294 |
hs2021 |
ENH_DISCR_24 |
Negative |
||
|
Chr5 |
176,076,732 |
176,078,530 |
hs2007 |
Positive |
Heart |
3/7 |
|
|
Chr8 |
59,769,794 |
59,772,587 |
hs2029 |
ENH_DISCR_32 |
Negative |
||
|
Chr9 |
75,758,359 |
75,760,288 |
hs2000 |
Negative |
|||
|
Chr11 |
74,781,340 |
74,785,285 |
hs2047 |
Negative |
|||
|
Chr12 |
31,867,650 |
31,868,817 |
hs2043 |
Negative |
|||
|
Chr16 |
89,384,737 |
89,387,643 |
hs2036 |
Negative |
|||
|
Chr17 |
45,368,528 |
45,369,514 |
hs2033 |
Positive |
|||
|
Chr17 |
73,347,819 |
73,348,933 |
hs2023 |
ENH_DISCR_26 |
Negative |
||
|
Chr20 |
48,291,612 |
48,294,178 |
hs2045 |
ENH_DISCR_48 |
Negative |
||
|
Chr22 |
21,953,368 |
21,954,302 |
hs2026 |
ENH_DISCR_29 |
Positive |
Tail |
9/17 |
|
|
|||||||
|
Yip et al. Genome Biology 2012 13:R48 doi:10.1186/gb-2012-13-9-r48 |
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