Table 4

Results of the predicted enhancers for experimental validation in the Medaka fish reporter assays

Coordinates (hg19)

ID

Enhancer activity

Tissues with patterns


Chr1

39630305

39631117

+

ENH_DISCR_2

Positive

Tectum, fin

Chr1

27448948

27449785

-

ENH_DISCR_38

Negative

Chr2

64877588

64878573

-

ENH_DISCR_16

Negative

Not consistent

Chr2

7025939

7026794

+

ENH_DISCR_18

Positive

Telencephalon

Chr2

169972473

169973432

-

ENH_DISCR_37

Positive

Epidermis

Chr3

20009087

20009933

+

ENH_DISCR_14

Negative

Not consistent

Chr3

71276246

71277150

-

ENH_DISCR_19

Negative

Not consistent

Chr3

124305687

124306362

+

ENH_DISCR_34

Positive

Epidermis

Chr3

65590259

65591167

-

ENH_DISCR_41

Positive

Blood_heart

Chr3

141579681

141580471

+

ENH_DISCR_44

Weak

Blood

Chr4

109893826

109894623

-

ENH_DISCR_24

Negative

Not consistent

Chr6

158653651

158654413

+

ENH_DISCR_1

Negative

Not consistent/heart

Chr8

91239118

91239934

-

ENH_DISCR_17

Positive

Telencephalon

Chr8

59770666

59771377

-

ENH_DISCR_32

Positive

Telencephalon

Chr10

97054745

97055495

-

ENH_DISCR_47

Positive

Epidermis

Chr12

95567438

95568125

-

ENH_DISCR_35

Positive

Blood, ear

Chr12

755392

756170

-

ENH_DISCR_45

Weak

Epidermis

Chr14

35805596

35806453

+

ENH_DISCR_21

Positive

Epidermis, late

Chr15

89638466

89639233

+

ENH_DISCR_12

Negative

Chr17

46503536

46504314

-

ENH_DISCR_13

Positive

Telencephalon

Chr17

34953545

34954303

+

ENH_DISCR_22

Weak

Epidermis, blood

Chr17

73347806

73348761

-

ENH_DISCR_26

Negative

Not consistent

Chr17

76254538

76255291

+

ENH_DISCR_31

Weak

Blood

Chr19

33162656

33163445

-

ENH_DISCR_40

Positive

Blood

Chr20

48293080

48293844

-

ENH_DISCR_48

Positive

Epidermis, blood

Chr22

28430853

28431678

-

ENH_DISCR_25

Positive

Tectum

Chr22

21953421

21954149

+

ENH_DISCR_29

Positive

Telencephalon


Yip et al. Genome Biology 2012 13:R48   doi:10.1186/gb-2012-13-9-r48

Open Data