Table 2

Analysis of over- and underrepresented secondary motifs on promoters

TF

TF2

p value

CTCF

AP-2

< 0.001

E2F4

< 0.001

GABP

0.031

LBP-1

0.999

NF-Y

< 0.001

Pax5

0.046

STAT1

AP-1

< 0.001

Secondary motifs (TF2 column) over- and underrepresented on promoters with functional TFBSs (TF column) versus promoters with nonfunctional TFBSs (TF column).

Whitfield et al. Genome Biology 2012 13:R50   doi:10.1186/gb-2012-13-9-r50