HMP tongue dorsum variant motif. This is a pairwise sequence alignment of a variant region between two closely related Streptococcus oralis strains. Matching alignment columns contain an asterisk underneath the column while columns with substitutions are indicated in lower case. The two motifs depicted in the image, motif1 and motif2, were automatically detected and output by MetAMOS.
Treangen et al. Genome Biology 2013 14:R2 doi:10.1186/gb-2013-14-1-r2