Log likelihood vs numbers of mis-assembly features and suspicious regions for E. coli. Log likelihoods are shown on the x-axis and numbers of mis-assembly features and suspicious regions reported by amosvalidate are shown on the y-axis. Each symbol corresponds to an assembly generated using an assembler for some hash length and the sizes of the symbols correspond to similarity with reference. The R2 values are: (i) log likelihood vs number of mis-assembly features: 0.8922, (ii) log likelihood vs number of suspicious regions: 0.9039, (iii) similarity vs number of mis-assembly features: 0.8211, (iv) similarity vs number of suspicious regions: 0.7723.
Rahman and Pachter Genome Biology 2013 14:R8 doi:10.1186/gb-2013-14-1-r8