Table 2

Likelihoods of GAGE assemblies of S. aureus

Assembler

Likelihood

Number of reads mapped

Coverage (%)

Scaffold N50 (kb)

Contig N50 (kb)


ABySS

-23.34 × 107

1236230

99.74a

34

29.2


ALLPATHS-LG

-24.53 × 107

1220328

99.38

1092

96.7


Bambus2

-23.76 × 107

1200527

98.68

1084

50.2


MSR-CA

-25.85 × 107

1192001

98.70

2412

59.2


SGA

-26.61 × 107

1018936

98.09

208

4.0


SOAPdenovo

-23.55 × 107

1212384

99.62

332

288.2


Velvet

-23.28 × 107

1203907

99.21

762

48.4


Reference

-22.38 × 107

1268718

-

-

-


a Value reported in original paper is 98.63.

Rahman and Pachter Genome Biology 2013 14:R8   doi:10.1186/gb-2013-14-1-r8

Open Data