Table 3

Likelihoods of GAGE assemblies of R. sphaeroides

Assembler

Likelihood

Number of reads mapped

Coverage (%)

Scaffold N50 (kb)

Contig N50 (kb)


ABySS

-27.55 × 107

1199197

99.11a

9

5.9


ALLPATHS-LG

-26.61 × 107

1237938

99.53

3192

42.5


Bambus2

-32.56 × 107

1111596

95.07

2439

93.2


CABOG

-39.23 × 107

1022732

92.49

66

20.2


MSR-CA

-31.61 × 107

1155078

96.48

2976

22.1


SGA

-31.58 × 107

1031547

97.69

51

4.5


SOAPdenovo

-27.67 × 107

1212959

99.12

660

131.7


Velvet

-28.77 × 107

1176125

98.40

353

15.7


Reference

-25.99 × 107

1255750

-

-

-


a Value reported in original paper is 96.99.

Rahman and Pachter Genome Biology 2013 14:R8   doi:10.1186/gb-2013-14-1-r8

Open Data