Table 4

Likelihoods of GAGE assemblies of human chromosome 14

Assembler

Likelihood

Number of reads mapped

Coverage (%)

Scaffold N50 (kb)

Contig N50 (kb)


ABySS

-23.44 × 108

22096466

82.22

2.1

2


ALLPATHS-LG

-22.77 × 108

23122569

97.24

81647

36.5


CABOG

-21.26 × 108

23433424

98.32

393

45.3


SOAPdenovo

a

a

98.17

455

14.7


Reference

-19.04 × 108

23978017

-

-

-


a Likelihood not computed as reads could not be mapped with Bowtie 2.

Rahman and Pachter Genome Biology 2013 14:R8   doi:10.1186/gb-2013-14-1-r8

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