Table 5

Likelihoods of GAGE assemblies of a bumblebee, B. impatiens

Assembler

Likelihood

# reads mapped

Scaffold N50 (kb)

Contig N50 (kb)


ABySS

-30.83 × 109

72629126

-

-


CABOG

-19.99 × 109

92844610

1125

23.5


MSR-CA

-22.84 × 109

78755756

1246

32.4


SOAPdenovo

a

a

1374

57.1


a Likelihood not computed as reads could not be mapped with Bowtie 2.

Rahman and Pachter Genome Biology 2013 14:R8   doi:10.1186/gb-2013-14-1-r8

Open Data