Table 2

Metrics for simulating normal contamination in tumor and normal genome FASTA files
SNP density Type Millions of reads
Normal Tumor content
30% 60% 100%
0 Normal 8 5.6 3.2 0
Tumor 0 2.4 4.8 8
0.001 Normal 8 5.6 3.2 0
Tumor 0 2.4 4.8 8
0.01 Normal 8 5.6 3.2 0
Tumor 0 2.4 4.8 8
0.1 Normal 8 5.6 3.2 0
Tumor 0 2.4 4.8 8
0.5 Normal 8 5.6 3.2 0
Tumor 0 2.4 4.8 8

Yen et al.

Yen et al. Genome Biology 2013 14:R113   doi:10.1186/gb-2013-14-10-r113

Open Data