Additional file 7.

Examples of previously annotated meRNAs that were also identified in this study. High resolution maps of DNAse I (black), H3K4me1 (dark blue), H3K4me3 (light blue), Gata1 (red), nanoCAGE (minus stand, dark green; plus strand, light green) and RNA-seq (orange) across mouse (A) Nprl3 (chr11:32123000 to 32175999), (B) Ccdc88c (chr12:102134000 to 102272999), (C) Inpp5d (chr1:89519000 to 89642999), (D) Dnttip1 (chr11:32045920 to 32245919) and (E) Hagh (chr17:24962000 to 25015999). Grey represents the regions previously annotated as enhancer-associated alternative first exons [20].

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Marques et al. Genome Biology 2013 14:R131   doi:10.1186/gb-2013-14-11-r131