Table 1

Summary statistics of small RNA libraries
Raw trimmed Genome matched
Tissue or stress Code Abundancea Distinctb Abundancec Distinctd
Root BDI08 5,103,699 1,055,138 3,942,845 597,486
Seedling OBD03 2,624,702 1,263,576 1,566,530 548,313
Leaf 1 BDI04 5,207,568 1,425,013 4,305,921 959,519
Leaf 2 BDI09 6,991,777 736,393 5,315,520 270,687
Stem BDI06 3,855,537 1,926,121 3,209,322 1,435,137
Leaf and stem OBD02 3,603,581 1,633,352 2,316,244 739,198
Panicle 1 BDI05 4,944,182 2,166,081 4,102,150 1,567,160
Panicle 2 OBD01 3,992,373 2,135,020 2,783,725 1,191,806
Shoot control for stress BDI02 2,494,849 1,077,185 1,975,853 800,615
Drought-stressed shoot BDI03 1,351,288 515,704 1,038,168 351,245
Salt-stressed shoot BDI17 8,498,042 2,149,559 7,275,111 1,542,354
Cold-stressed shoot BDI01 722,947 379,189 538,881 260,131
Heat-stressed shoot BDI18 8,861,608 2,936,249 7,336,506 2,042,837
Submergence-stressed shoot BDI19 9,421,125 4,336,814 7,586,861 3,037,780
Shoot control for low phosphate BDI15 11,491,988 2,924,520 9,510,554 2,086,843
Phosphate-starved shoot BDI16 12,405,206 2,977,218 10,490,572 2,153,426
Pooled stresses OBD04 2,531,278 1,133,267 1,753,994 590,660
Totale 94,101,750 21,441,607 75,048,757 12,108,240

aRaw-trimmed abundance is the number of sequences obtained after trimming. bRaw-trimmed distinct is the number of different sequences. cGenome-matched abundance is the number of sequences that match perfectly to the genome. dGenome-matched distinct is the total number of different sequences that match to the genome. eThe totals of the abundance columns are sums and the totals of the distinct columns are unions (to give the number of non-redundant sequences).

Jeong et al.

Jeong et al. Genome Biology 2013 14:R145   doi:10.1186/gb-2013-14-12-r145

Open Data